Dockerfile.mpi

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FROM fedora:27
 
RUN dnf -y update \
    && dnf install -y sudo \
    && adduser test_user \
    && echo "test_user ALL=(root) NOPASSWD:ALL" > /etc/sudoers.d/test_user \
    && chmod 0440 /etc/sudoers.d/test_user
 
USER test_user
WORKDIR /home/test_user
 
RUN sudo dnf -y install \
        openmpi-devel \
        gcc-gfortran \
        gcc-c++ \
        gsl-devel \
        metis-devel \
        lapack-devel \
        openblas-devel \
        cmake \
    && sudo dnf clean all
ENV PATH="${PATH}:/usr/lib64/openmpi/bin/"
 
# Build the SuiteSparse libraries for sparse matrix support
RUN curl -kLO http://faculty.cse.tamu.edu/davis/SuiteSparse/SuiteSparse-5.1.0.tar.gz \
    && tar -zxvf SuiteSparse-5.1.0.tar.gz \
    && export CXX=/usr/bin/cc \
    && cd SuiteSparse \
    && sudo make install INSTALL=/usr/local BLAS="-L/lib64 -lopenblas"
 
# Install json-fortran
RUN curl -LO https://github.com/jacobwilliams/json-fortran/archive/6.1.0.tar.gz \
    && tar -zxvf 6.1.0.tar.gz \
    && cd json-fortran-6.1.0 \
    && export FC=gfortran \
    && mkdir build \
    && cd build \
    && cmake -D SKIP_DOC_GEN:BOOL=TRUE .. \
    && sudo make install
 
# copy CVODE source
COPY cvode-3.4-alpha.tar.gz cvode-3.4-alpha.tar.gz
 
# Install a modified version of CVODE
RUN tar -zxvf cvode-3.4-alpha.tar.gz \
    && cd cvode-3.4-alpha \
    && mkdir build \
    && cd build \
    && cmake -D CMAKE_BUILD_TYPE=release \
             -D CMAKE_C_FLAGS_DEBUG="-g -pg" \
             -D CMAKE_EXE_LINKER_FLAGS_DEBUG="-pg" \
             -D CMAKE_MODULE_LINKER_FLAGS_DEBUG="-pg" \
             -D CMAKE_SHARED_LINKER_FLAGS_DEBUG="-pg" \
             -D KLU_ENABLE:BOOL=TRUE \
             -D KLU_LIBRARY_DIR=/usr/local/lib \
             -D KLU_INCLUDE_DIR=/usr/local/include \
             .. \
    && sudo make install
 
# Update environment variables
ENV LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:/usr/local/lib:/usr/local/lib64:/usr/local/jsonfortran-gnu-6.1.0/lib"
ENV PATH="${PATH}:/usr/local/jsonfortran-gnu-6.1.0/lib"
 
# NOTE: Modify .dockerignore to whitelist files/directories to copy.
COPY . /home/test_user/camp/
 
# Build CAMP
 RUN mkdir build \
    && cd build \
    && export JSON_FORTRAN_HOME="/usr/local/jsonfortran-gnu-6.1.0" \
    && cmake -D CMAKE_BUILD_TYPE=release \
             -D CMAKE_C_FLAGS_DEBUG="-g -pg" \
             -D CMAKE_Fortran_FLAGS_DEBUG="-g -pg" \
             -D CMAKE_MODULE_LINKER_FLAGS="-pg" \
             -D ENABLE_DEBUG:BOOL=TRUE \
             -D ENABLE_MPI:BOOL=TRUE \
             -D CMAKE_Fortran_COMPILER=/usr/lib64/openmpi/bin/mpif90 \
             ../camp \
    && make \
    && sudo make install
 
WORKDIR /home/test_user/build